Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data

نویسندگان

  • Oliver Rübel
  • Soile V. E. Keränen
  • Mark D. Biggin
  • David W. Knowles
  • Gunther H. Weber
  • Hans Hagen
  • Bernd Hamann
  • E. Wes Bethel
چکیده

1 Computational Research Division, Lawrence Berkeley National Laboratory (LBNL), One Cyclotron Road, CA, 94720, USA. {oruebel, ghweber, ewbethel}@lbl.gov 2 Genomics Division, LBNL, One Cyclotron Road, CA, 94720, USA. {mdbiggin, svekeranen}@lbl.gov 3 Life Sciences Division, LBNL, One Cyclotron Road, CA, 94720, USA. {dwknowles}@lbl.gov 4 Institute for Data Analysis and Visualization (IDAV), Department of Computer Science, University of California, Davis, One Shields Avenue, Davis, CA, 95616, USA. {bhamann}@ucdavis.edu 5 International Research Training Group 1131, Technische Universität Kaiserslautern, Erwin Schrödinger-Straße, 67653, Kaiserslautern, Germany. {hagen}@informatik.uni-kl.de

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Transient expression of green fluorescent protein in radish (Raphanus sativus) using a turnip mosaic virus based vector

It is possible to use transgenic plants, as bioreactors, for the production of recombinant inexpensive chemicals and drug components. Transient gene expression is an appropriate alternative to stable transformation because it allows an inexpensive and rapid method for expression of recombinant proteins in plant tissues. In recent years, plant viral vectors have been increasingly developed as su...

متن کامل

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Linked Physical and Abstract Data Views

The Berkeley Drosophila Transcription Network Project (BDTNP) has developed a suite of methods that support quantitative, computational analysis of threedimensional (3D) gene expression patterns with cellular resolution in early Drosophila embryos, aiming at a more in-depth understanding of gene regulatory networks. We describe a new tool, called PointCloudXplore (PCX), that supports effective ...

متن کامل

Identification of Prognostic Genes in Her2-enriched Breast Cancer by Gene Co-Expression Net-work Analysis

Introduction: HER2-enriched subtype of breast cancer has a worse prognosis than luminal subtypes. Recently, the discovery of targeted therapies in other groups of breast cancer has increased patient survival. The aim of this study was to identify genes that affect the overall survival of this group of patients based on a systems biology approach. Methods: Gene expression data and clinical infor...

متن کامل

matVTK - 3D Visualization for MATLAB

The rapid and flexible visualization of large amounts of complex data has become a crucial part in medical image analysis. In recent years the Visualization Toolkit (VTK) has evolved as the de-facto standard for open-source medical data visualization. It features a clean design based on a data flow paradigm, which the existing wrappers for VTK (Python, Tcl/Tk, Simulink) closely follow. This all...

متن کامل

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

To allow a more rigorous understanding of animal gene regulatory networks, the Berkeley Drosophila Transcription Network Project (BDTNP) has developed a suite of methods that support quantitative, computational analysis of three-dimensional (3D) gene expression patterns with cellular resolution in early Drosophila embryos. Here we report the first components of a visualization tool, PointCloudX...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2012